PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g24170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 696aa    MW: 75404.1 Da    PI: 6.0986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g24170genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07306326526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f++ G C++Gd C +aHg
  Tp4g24170 306 PCPDFRK-GACRRGDMCEYAHG 326
                8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.03E-1639182IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1741183IPR020683Ankyrin repeat-containing domain
CDDcd002041.58E-1447181No hitNo description
PfamPF127961.2E-1084157IPR020683Ankyrin repeat-containing domain
SMARTSM002480.007889119IPR002110Ankyrin repeat
PROSITE profilePS5029716.33589192IPR020683Ankyrin repeat-containing domain
PRINTSPR014153.6E-590105IPR002110Ankyrin repeat
PROSITE profilePS5008812.476124159IPR002110Ankyrin repeat
SMARTSM002480.0039124156IPR002110Ankyrin repeat
PRINTSPR014153.6E-5143157IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4306328IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001334364IPR000571Zinc finger, CCCH-type
SMARTSM0035668336359IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.963336360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MCCGSDRLNQ IVSSTSSSPI SFEDTNLLTN TEMNHLRVET EDTFASLLEL AANNDVEGVR  60
LSIDRDPSCV DEAGLWYGRQ KGSKAMVNDQ RTPLMVAATY GSIDVIKLIV SLTDANVNRA  120
CGNDQTTALH CAASGGAVNA IQVVKLLLAA GADLNLLDAE GQRAGDVIVV PPKLEGVKLM  180
LQELLSADGS STAERNLRVV TNLPSRSSTS PSHSPSGEND ESGLGSPLGS PFKLKSTEFK  240
KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE  360
ELRPLYASTG SAVPSPRSNA DFAAALSLLP GSPSAVSAMS PLSPSAAGNG MPHSNMAWPQ  420
PNVPALHLPG SNLQSSRLRS SLNARDIPQD EFNMLADYEQ QQLLNEFSNS LSRSGRMKSL  480
PPSNLEDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQHQQQS MLSPINTSFS  540
SPKSVDHSLF SGGGRMSPRN VVEPISPMSS RVSMLAHLSS RELRTNSSPI VGSPVNNNNS  600
WSSKWGSSNG KPDWGMSSEA LGKLRSSSSF DGDEPDVSWV QSLVKESPYE ANEKAATSSS  660
GENGKQPTAV DAVMDHAGLE AWIEQMQLDQ LVAQQN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525550.0AK352555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411461.10.0hypothetical protein EUTSA_v10016315mg
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLE4MVK80.0E4MVK8_EUTHA; mRNA, clone: RTFL01-01-D15
TrEMBLV4M9940.0V4M994_EUTSA; Uncharacterized protein
STRINGAT2G41900.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain